# Third-party notices

Tinker is a client-side bundle: every runtime dependency below is compiled into
the JavaScript served to the browser, so distributing the built app distributes
copies of that software. Each entry reproduces the licence text its terms
require us to carry.

Nothing here is a server-side or build-time-only dependency (Vite, TypeScript,
Vitest, oxlint, Prettier, Sass and the `tools/spectral/` Python sidecar are not
shipped and are not listed). Update this file whenever a runtime dependency is
added, removed, or changes licence.

## Mol\*

Tinker's 3D structure viewer (`src/components/viewer/molstar/*`) is built on
[Mol\*](https://molstar.org/) ([`molstar/molstar`](https://github.com/molstar/molstar)),
used unmodified as the `molstar` npm package. Mol\* is released under the MIT
licence:

```
The MIT License

    Copyright (c) 2017 - now, Mol* contributors

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
```

MIT imposes no attribution requirement beyond carrying that notice — no
copyleft, no source-disclosure obligation, no restriction on commercial use.
Keeping this file in the repository and shipping it alongside the built app
satisfies it.

Mol\* additionally **asks** (does not require) to be cited in publications:

> David Sehnal, Sebastian Bittrich, Mandar Deshpande, Radka Svobodová, Karel
> Berka, Václav Bazgier, Sameer Velankar, Stephen K Burley, Jaroslav Koča,
> Alexander S Rose: _Mol\* Viewer: modern web app for 3D visualization and
> analysis of large biomolecular structures_, Nucleic Acids Research, 2021;
> https://doi.org/10.1093/nar/gkab314

## Other bundled dependencies

All MIT, and all carrying the same permission text reproduced above under the
copyright holder named here:

| Package                                                       | Version | Licence | Copyright                                                                                                                     |
| ------------------------------------------------------------- | ------- | ------- | ----------------------------------------------------------------------------------------------------------------------------- |
| [react](https://github.com/facebook/react)                    | 19.x    | MIT     | Copyright (c) Meta Platforms, Inc. and affiliates.                                                                            |
| [react-dom](https://github.com/facebook/react)                | 19.x    | MIT     | Copyright (c) Meta Platforms, Inc. and affiliates.                                                                            |
| [react-router-dom](https://github.com/remix-run/react-router) | 7.x     | MIT     | Copyright (c) React Training LLC 2015-2019, Copyright (c) Remix Software Inc. 2020-2021, Copyright (c) Shopify Inc. 2022-2023 |
| [zustand](https://github.com/pmndrs/zustand)                  | 5.x     | MIT     | Copyright (c) 2019 Paul Henschel                                                                                              |
| [immutable](https://github.com/immutable-js/immutable-js)     | 5.x     | MIT     | Copyright (c) 2014-present, Lee Byron and other contributors.                                                                 |

Reached transitively through Mol\* and bundled with it:

- **[rxjs](https://github.com/ReactiveX/rxjs)** 7.x — **Apache License 2.0**,
  © the RxJS contributors (the published `LICENSE.txt` is the bare Apache text
  with no copyright line appended). The package ships no `NOTICE` file, so §4(d)
  adds nothing to carry; the licence itself is at
  https://www.apache.org/licenses/LICENSE-2.0 and in
  `node_modules/rxjs/LICENSE.txt`. Tinker does not modify it, so §4(b)'s
  "state the changes" clause does not apply either.
- **[tslib](https://github.com/Microsoft/tslib)** 2.x — **0BSD**, Copyright (c)
  Microsoft Corporation. 0BSD waives the attribution requirement entirely; it is
  listed for completeness.

## Data sources (not software)

- **AlphaFold DB** structures fetched at runtime (`src/lib/afdb.ts`) are
  CC-BY-4.0 — attribute DeepMind/EMBL-EBI when redistributing a prediction.
- **EBI** Clustal Omega / NCBI BLAST+ web services and **UniProt** REST
  (`src/lib/ebiBlast.ts`, `src/lib/ebiPhylogeny.ts`) are called as public APIs
  under their own terms of use; no EBI or UniProt code is bundled.